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IllnessSmith-Lemli-Opitz syndrome, differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Smith-Lemli-Opitz syndrome comprising 1 core gene, 13 core candidate genes and altogether 29 curated genes according to the clinical signs

ID
SP5011
Number of genes
29 Accredited laboratory test
Examined sequence length
42,9 kb (Core-/Core-canditate-Genes)
65,3 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
CC2D2A4863NM_001080522.2AR
CEP2907440NM_025114.4AR
DHCR71428NM_001360.3AR
EBP693NM_006579.3XL
KIF144947NM_014875.3AR
LZTR12523NM_006767.4AD, AR
MKS11680NM_017777.4AR
NPHP33993NM_153240.5AR
PTPN111782NM_002834.5AD
RPGRIP1L3948NM_015272.5AR
SOS14002NM_005633.4AD
TCTN22094NM_024809.5AR
TMEM216438NM_001173990.3AR
TMEM672988NM_153704.6AR
B9D1615NM_015681.5AR
B9D2528NM_030578.4AR
BRAF2301NM_004333.6AD
DHCR241551NM_014762.4AR
FDFT11254NM_004462.5AR
GLI34743NM_000168.6AD
KRAS567NM_004985.5AD
MAP2K11182NM_002755.4AD
NRAS570NM_002524.5AD
RAF11947NM_002880.4AD
RIT1660NM_006912.6AD
SC5D900NM_001024956.3AR
SOS23999NM_006939.4AD
TMEM107514NM_032354.5AR
TMEM2311110NM_001077416.2AR

Informations about the disease

Clinical Comment

Smith-Lemli-Opitz syndrome is a complex developmental disorder with pronounced facial features, microcephaly, intellectual deficit and behavioral problems/autism as well as malformations of the heart, lungs, kidneys, gastrointestinal tract and genitals. Most patients have syndactyly, but the symptoms can vary considerably. Slightly affected persons show minor physical abnormalities with learning and behavioral problems. Severe cases can be life-threatening with profound intellectual deficits and more severe physical abnormalities.The differential diagnosis includes Meckel and Noonan syndrome, Pallister-Hall syndrome, desmosterolosis, MEND syndrome (chondrodysplasia punctata 2), squalene synthase deficiency and lathosterolosis.

(Basic diagnostic genes: ###)

Reference: https://www.ncbi.nlm.nih.gov/books/NBK1143/

 

Synonyms
  • Sympt.: Polydactyly, sex reversal [in males], renal hypoplasia, unilobar lung
  • Alias: 7-dehydrocholesterol reductase deficiency
  • Alias: Lethal acrodysgenital syndrome
  • Alias: Rutledge lethal multiple anomaly syndrome
  • Alias: SLO
  • Bardet-Biedl syndrome 13 (MKS1)
  • Bardet-Biedl syndrome 14 (CEP290)
  • Bardet-Biedl syndrome 14, modifier of (TMEM67)
  • COACH syndrome 1 (TMEM67)
  • COACH syndrome 2 (CC2D2A)
  • COACH syndrome 3 (RPGRIP1L)
  • Cardiofaciocutaneous syndrome (BRAF)
  • Cardiofaciocutaneous syndrome 2 (KRAS)
  • Cardiofaciocutaneous syndrome 3 (MAP2K1)
  • Cardiomyopathy, dilated, 1NN (RAF1)
  • Chondrodysplasia punctata, XLD (EBP)
  • Desmosterolosis (DHCR24)
  • Fibromatosis, gingival, 1 (SOS1)
  • Greig cephalopolysyndactyly syndrome (GLI3)
  • Joubert syndrome 2 (TMEM216)
  • Joubert syndrome 20 (TMEM231)
  • Joubert syndrome 24 (TCTN2)
  • Joubert syndrome 27 (B9D1)
  • Joubert syndrome 28 (MKS1)
  • Joubert syndrome 29 (TMEM107)
  • Joubert syndrome 34 (B9D2)
  • Joubert syndrome 5 (CEP290)
  • Joubert syndrome 6 (TMEM67)
  • Joubert syndrome 7 (RPGRIP1L)
  • Joubert syndrome 9 (CC2D2A)
  • LEOPARD syndrome 1 (PTPN11)
  • LEOPARD syndrome 2 (RAF1)
  • LEOPARD syndrome 3 (BRAF)
  • Lathosterolosis (SC5D)
  • Leber congenital amaurosis 10 (CEP290)
  • MEND syndrome (EBP)
  • Meckel syndrome 1 (MKS1)
  • Meckel syndrome 10 (B9D2)
  • Meckel syndrome 11 (TMEM231)
  • Meckel syndrome 12 (KIF14)
  • Meckel syndrome 13 (TMEM107)
  • Meckel syndrome 2 (TMEM216)
  • Meckel syndrome 3 (TMEM67)
  • Meckel syndrome 4 (CEP290)
  • Meckel syndrome 5 (RPGRIP1L)
  • Meckel syndrome 6 (CC2D2A)
  • Meckel syndrome 7 (NPHP3)
  • Meckel syndrome 8 (TCTN2)
  • Meckel syndrome 9 (B9D1)
  • Metachondromatosis (PTPN11)
  • Microcephaly 20, primary, AR (KIF14)
  • Nephronophthisis 11 (TMEM67)
  • Nephronophthisis 3 (NPHP3)
  • Noonan syndrome 1 (PTPN11)
  • Noonan syndrome 10 (LZTR1)
  • Noonan syndrome 2 (LZTR1)
  • Noonan syndrome 3 (KRAS)
  • Noonan syndrome 4 (SOS1)
  • Noonan syndrome 5 (RAF1)
  • Noonan syndrome 6 (NRAS)
  • Noonan syndrome 7 (BRAF)
  • Noonan syndrome 8 (RIT1)
  • Noonan syndrome 9 (SOS2)
  • Orofaciodigital syndrome XVI (TMEM107)
  • Pallister-Hall syndrome (GLI3)
  • Polydactyly, postaxial, types A1 + B (GLI3)
  • Polydactyly, preaxial, type IV (GLI3)
  • RAS-associated autoimmune leukoproliferative disorder (KRAS)
  • RHYNS syndrome (TMEM67)
  • Renal-hepatic-pancreatic dysplasia 1 (NPHP3)
  • Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic (KRAS)
  • Senior-Loken syndrome 6 (CEP290)
  • Smith-Lemli-Opitz syndrome (DHCR7)
  • Squalene synthase deficiency (FDFT1)
Heredity, heredity patterns etc.
  • AD
  • AR
  • XL
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined