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Interdisciplinary CompetenceMolecular Diagnostics
Know how in the analysis of genetic material.
For the benefit of patients.

IllnessSevere Combined Immuno Deficiency, SCID; differential diagnosis

Summary

Short information

A comprehensive differential diagnostic panel containing 1 guideline-curated core gene, 20 additional core candidate genes and altogether 37 curated genes according to the clinical diagnosis Severe Combined Immuno Deficiency, SCID

ID
SP1007
Number of genes
35 Accredited laboratory test
Examined sequence length
37,8 kb (Core-/Core-canditate-Genes)
74,5 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
  • Oral mucosa (at least 2 swabs)
Diagnostic indications

NGS +

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
ADA1092NM_000022.4AR
AK2675NM_001199199.3AR
CD247492NM_000734.4AR
CD3D516NM_000732.6AR
CD3E624NM_000733.4AR
CORO1A1386NM_007074.4AR
DCLRE1C2079NM_001033855.3AR
IL2RG1110NM_000206.3XLR
IL7R1380NM_002185.5AR
JAK33375NM_000215.4AR
LAT922NM_001014987.2AR
LIG42736NM_002312.3AR
NHEJ1900NM_024782.3AR
PRKDC12293NM_001081640.2AR
PTPRC264NM_001267798.2AR
RAC2579NM_002872.5AD
RAG13132NM_000448.3AR
RAG21584NM_000536.4AR
TTC7A2577NM_020458.4AR
ADA21536NM_001282225.2AR
CARD113465NM_032415.7AD, AR
CHD78994NM_017780.4AD
CTPS11776NM_001905.4AR
FOXN11947NM_003593.3AD, AR
IKBKB2265NM_001190720.3AD, AR
IL21R1617NM_021798.4AR
LCK1530NM_001042771.3AR
ORAI1912NM_032790.3AR
PAX11374NM_001257096.2AR
PNP870NM_000270.4AR
SMARCAL12865NM_001127207.2AR
STAT5B2364NM_012448.4AR
STIM12058NM_003156.4AR
TCN21284NM_000355.4AR
ZAP701860NM_001079.4AR

Informations about the disease

Synonyms
  • Allelic: Autoimmune disease, multisystem, infantile-onset, 2 (ZAP70)
  • Allelic: Hepatitis C virus, susceptibility to (PTPRC)
  • Allelic: Hypogonadotropic hypogonadism 5 with/-out anosmia (CHD7)
  • Allelic: IgE, elevated level of (IL21R)
  • Allelic: Multiple myeloma, resistance to (LIG4)
  • Allelic: Myopathy, tubular aggregate, 1 (STIM1)
  • Allelic: Myopathy, tubular aggregate, 2 (ORAI1)
  • Allelic: Stormorken syndrome (STIM1)
  • Adenosine deaminase deficiency, partial (ADA)
  • Allelic: Anauxetic dysplasia 1 (RMRP)
  • Allelic: Intellectual developmental disorder dysmorphic face, speech delay, T-cell abnorm (BCL11B)
  • Allelic: Metaphyseal dysplasia without hypotrichosis (RMRP)
  • B-cell expansion with NFKB + T-cell anergy (CARD11)
  • CHARGE syndrome (CHD7)
  • Cartilage-hair hypoplasia (RMRP)
  • Combined cellular + humoral immune defects with granulomas (RAG1, RAG2)
  • Combined immunodeficiencies with associated or syndromic features [panelapp] (RMRP)
  • Combined immunodeficiency, XL, moderate (IL2RG)
  • Gastrointestinal defects + immunodeficiency syndrome (TTC7A)
  • Growth hormone insensitivity with immune dysregulation 1, AR (STAT5B)
  • Growth hormone insensitivity with immune dysregulation 2, AD (STAT5B)
  • Immunodeficiency 10 (STIM1)
  • Immunodeficiency 11A (CARD11)
  • Immunodeficiency 11B with atopic dermatitis (CARD11)
  • Immunodeficiency 15A (IKBKB)
  • Immunodeficiency 15B (IKBKB)
  • Immunodeficiency 18 (CD3E)
  • Immunodeficiency 18, SCID variant (CD3E)
  • Immunodeficiency 19 (CD3D)
  • Immunodeficiency 22 (LCK)
  • Immunodeficiency 24 (CTPS1)
  • Immunodeficiency 25 (CD247)
  • Immunodeficiency 26, with/-out neurologic abnormalities (PRKDC)
  • Immunodeficiency 48 (ZAP70)
  • Immunodeficiency 49, severe combined (BCL11B)
  • Immunodeficiency 52 (LAT)
  • Immunodeficiency 56 (IL21R)
  • Immunodeficiency 73A with defective neutrophil chemotaxix + leukocytosis (RAC2)
  • Immunodeficiency 73B with defective neutrophil chemotaxis + lymphopenia (RAC2)
  • Immunodeficiency 73C with defective neutrophil chemotaxis + hypogammaglobulinemia (RAC2)
  • Immunodeficiency 8 (CORO1A)
  • Immunodeficiency 9 (ORAI1)
  • Immunodeficiency due to purine nucleoside phosphorylase deficiency (PNP)
  • LIG4 syndrome (LIG4)
  • Omenn syndrome (RAG1, RAG2, DCLRE1C)
  • Omenn syndrome [panelapp] (RMRP)
  • Otofaciocervical syndrome 2 (PAX1)
  • Reticular dysgenesis (AK2)
  • SCID, autosomal recessive, T-negative/B-positive type (JAK3)
  • Schimke immunoosseous dysplasia (SMARCAL1)
  • Severe combined immunodeficiency + microcephaly, growth retard., sens. to ionizing radiation (NHEJ1)
  • Severe combined immunodeficiency due to ADA deficiency (ADA)
  • Severe combined immunodeficiency, Athabascan type (DCLRE1C)
  • Severe combined immunodeficiency, B cell-negative (RAG1, RAG2)
  • Severe combined immunodeficiency, T cell-negative, B-cell/natural killer-cell positive (PTPRC)
  • Severe combined immunodeficiency, T-cell negative, B-cell/natural killer cell-positive (IL7R)
  • Severe combined immunodeficiency, XL (IL2RG)
  • Sneddon syndrome (ADA2)
  • T-cell immunodeficiency, congenital alopecia + nail dystrophy (FOXN1)
  • T-cell lymphopenia, infantile, with/-out nail dystrophy, AD (FOXN1)
  • Transcobalamin II deficiency (TCN2)
  • Vasculitis, autoinflammation, immunodeficiency, and hematologic defects syndrome (ADA2)
  • a/b T-cell lymphopenia + g/d T-cell expansion, severe cytomegalovirus infect., autoimmunity (RAG1)
Heredity, heredity patterns etc.
  • AD
  • AR
  • XLR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined