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Interdisciplinary CompetenceMolecular Diagnostics
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IllnessLi-Fraumeni syndrome, differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Li-Fraumeni syndrome comprising 1 guideline-curated and 3 additional or altogether 10 curated genes according to the clinical signs

ID
LP5320
Number of genes
10 Accredited laboratory test
Examined sequence length
4,8 kb (Core-/Core-canditate-Genes)
32,4 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
CDKN2A471NM_000077.5AD, Sus
CHEK21632NM_007194.4AD
MDM21494NM_002392.5AD, AR
TP531182NM_000546.6AD
BRCA15592NM_007294.4AD, AR, Sus
BRCA210257NM_000059.4AD, AR, Sus
MLH12271NM_000249.4AR
MSH22805NM_000251.3AR, Sus
MSH64083NM_000179.3AR, Sus
PMS22589NM_000535.7Sus, AR

Informations about the disease

Clinical Comment

Li-Fraumeni syndrome is a rare disorder that greatly increases the risk of developing several types of cancer, especially in children and young adults. These cancers include breast cancer, osteo- and soft tissue sarcomas, brain tumors, leukemias and adrenocortical carcinomas. Other cancers are also more common. Li-Fraumeni syndrome is inherited in an autosomal dominant manner. A very similar disorder, called Li-Fraumeni-like syndrome, has many of the features mentioned above. Li-Fraumeni syndrome is associated with mutations in the tumor suppressor gene TP53. Nearly 75% of families with the classic syndrome and about 25% with Li-Fraumeni-like syndrome have germline mutations in this gene. De novo mutations occur in 7-20% of cases. Other genetic and environmental factors also likely influence the cancer risk in Li-Fraumeni syndrome. Which genetic factors play a role in these cases is unclear. The genes for DNA mismatch repair, breast/ovarian cancer and CHEK2 are the most important differential diagnoses. In families characterised according to the strictest criteria, TP53 mutations are detected in 80% of cases. A negative TP53 test result does not exclude the clinical diagnosis.

References: https://www.ncbi.nlm.nih.gov/books/NBK1311/

 

Synonyms
  • Alias: Sarcoma family syndrome (<45 years)...
  • ...osteosarcomas, breast/brain tumors, leukemia, adrenocortical carcinoma
  • Allelic: Bone marrow failure syndrome 5 (TP53)
  • Allelic: Lessel-Kubisch syndrome (MDM2)
  • Accelerated tumor formation, susceptibility to (MDM2)
  • Adrenocortical carcinoma, pediatric (TP53)
  • Allelic: Fanconi anemia, complementation group D1 (BRCA2)
  • Allelic: Fanconi anemia, complementation group S (BRCA1)
  • Basal cell carcinoma 7 (TP53)
  • Breast + colorectal cancer, susceptibility to (CHEK2)
  • Breast cancer, male, susceptibility to (BRCA2)
  • Breast cancer, somatic (TP53)
  • Breast cancer, susceptibility to (CHEK2)
  • Breast-ovarian cancer, familial, 1 (BRCA1)
  • Breast-ovarian cancer, familial, 2 (BRCA2)
  • Choroid plexus papilloma (TP53)
  • Colorectal cancer (TP53)
  • Colorectal cancer, hereditary nonpolyposis, type 1 (MSH2)
  • Colorectal cancer, hereditary nonpolyposis, type 2 (MLH1)
  • Colorectal cancer, hereditary nonpolyposis, type 4 (PMS2)
  • Colorectal cancer, hereditary nonpolyposis, type 5 (MSH6)
  • Endometrial cancer, familial (MSH6)
  • Glioblastoma 3 (BRCA2)
  • Glioma susceptibility 1 (TP53)
  • Hepatocellular carcinoma, somatic (TP53)
  • Li-Fraumeni syndrome (CHEK2, TP53)
  • Medulloblastoma (BRCA2)
  • Melanoma + neural system tumor syndrome (CDKN2A)
  • Melanoma, cutaneous malignant, 2 (CDKN2A)
  • Melanoma-pancreatic cancer syndrome (CDKN2A)
  • Mismatch repair cancer syndrome 1 (MLH1)
  • Mismatch repair cancer syndrome 2 (MSH2)
  • Mismatch repair cancer syndrome 3 (MSH6)
  • Mismatch repair cancer syndrome 4 (PMS2)
  • Muir-Torre syndrome (MLH1, MSH2)
  • Nasopharyngeal carcinoma, somatic (TP53)
  • Osteosarcoma (TP53)
  • Osteosarcoma, somatic (CHEK2)
  • Pancreatic cancer 2 (BRCA2)
  • Pancreatic cancer, somatic (TP53)
  • Pancreatic cancer, susceptibility to, 4 (BRCA1)
  • Prostate cancer (BRCA2)
  • Prostate cancer, familial, susceptibility to (CHEK2)
  • Wilms tumor (BRCA2)
Heredity, heredity patterns etc.
  • AD
  • AR
  • Sus
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined