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IllnessIntellectual deficit, autosomal recessive, non-syndromal; differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Intellectual deficit, autosomal recessive, no other symptoms comprising 6 and altogether 47 curated genes according to the clinical signs

ID
MP4445
Number of genes
24 Accredited laboratory test
Examined sequence length
15,2 kb (Core-/Core-canditate-Genes)
57,3 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
CC2D1A2856NM_017721.5AR
ELP22676NM_001242875.3AR
GRIK22727NM_021956.5AR, AD
NDST12649NM_001543.5AR
NSUN22304NM_017755.6AR
TRMT11980NM_001136035.4AR
ALKBH82052NM_001301010.3AR
CAMK2A1493NM_015981.4AD
EIF3F1091NM_003754.3AR
KDM5B4635NM_006618.5AR, AD
LINS12274NM_001040616.3AR
MAN1B12100NM_016219.5AR
MBOAT71200NM_001146056.3AR
MED234080NM_015979.4AR
METTL23573NM_001080510.5AR
PGAP12769NM_024989.4AR
PIGG3337NM_001127178.3AR
PRSS122628NM_003619.4AR
SCAPER4203NM_020843.4AR
SLC6A172184NM_001010898.4AR
ST3GAL31128NM_006279.5AR
TRAPPC93741NM_031466.8AR
TTI21527NM_001102401.4AR
TUSC31047NM_006765.4AR

Informations about the disease

Clinical Comment

Autosomal recessive mental retardation (ARMR) is genetically even more heterogeneous than the other monogenic forms of intellectual deficits (with the exception of AR-inherited metabolic disorders). The prevalence of ARMR in cohorts of affected children in a large population (excluding high rates of kin marriages) is approximately 10%. The risk for ARMR in children of first cousins or closer relatives is at least an order of magnitude higher than in children of unrelated parents. No prevalent genes or metabolic pathways are known for ARMR, the functions of the affected proteins are not limited to neurological/psychiatric aspects, and they are pleiotropic. Of presumably up to 3000 ARMR genes, fewer than 750 have been confirmed, and fewer than 500 additional candidate genes have been identified to date. In summary, the number of ARMR genes to be investigated is very large, with diagnostic yields currently not exceeding 10-20%, largely dependent on the quality of clinical pre-characterization). Targeted ARMR analysis strategies often yield negative DNA test results, which are by no means an exclusion of ARMR.

Reference: doi: 10.1007/s11825-018-0209-z

 

Synonyms
  • Alias: Intellectual deficit, non syndromic, AR
  • Alias: Mental retardation, non syndromic, AR
  • Allelic: Asthma, susceptibility to (HNMT)
  • Allelic: Autism spectrum disorder, [MONDO:0005258, panelapp] (KDM5A)
  • Allelic:Intellectual developmental disorder, AD 69 (LMAN2L)
  • Cortical dysplasia, complex, with other brain malformations 10 (APC2)
  • Developmental and epileptic encephalopathy 18 (SZT2)
  • Global developmental delay with/-out impaired intellectual development (CUX1)
  • Glycosylphosphatidylinositol biosynthesis defect 16 (PIGC)
  • Intellectual developmental disorder + retinitis pigmentosa (SCAPER)
  • Intellectual developmental disorder with autism + speech delay (TBR1)
  • Intellectual developmental disorder, AR 14 (TECR)
  • Intellectual developmental disorder, AR 2 (CRBN)
  • Intellectual developmental disorder, AR 34, with variant lissencephaly (CRADD)
  • Intellectual developmental disorder, AR 37 (ANK3)
  • Intellectual developmental disorder, AR 40 (TAF2)
  • Intellectual developmental disorder, AR 41 (KPTN)
  • Intellectual developmental disorder, AR 43 (WASHC4)
  • Intellectual developmental disorder, AR 45 (FBXO31)
  • Intellectual developmental disorder, AR 50 (EDC3)
  • Intellectual developmental disorder, AR 51 (HNMT)
  • Intellectual developmental disorder, AR 52 (LMAN2L)
  • Intellectual developmental disorder, AR 54 (TNIK)
  • Intellectual developmental disorder, AR 56 (ZC3H14)
  • Intellectual developmental disorder, AR 59 (IMPA1)
  • Intellectual developmental disorder, AR 60 (TAF13)
  • Intellectual developmental disorder, AR 61 (RUSC2)
  • Intellectual developmental disorder, AR 64 (LINGO1)
  • Intellectual developmental disorder, AR 66 (C12orf4)
  • Intellectual developmental disorder, AR 69 (ZBTB11)
  • Intellectual developmental disorder, AR 70 (RSRC1)
  • Intellectual developmental disorder, AR 71 (ALKBH8)
  • Intellectual developmental disorder, AR 73 (NAA20)
  • Intellectual developmental disorder, AR 74 (APC2)
  • Intellectual disability [MONDO:0001071, panelapp] (CCDC82)
  • Intellectual disability [MONDO:0001071, panelapp] (FILIP1)
  • Intellectual disability [MONDO:0001071, panelapp] (KDM5A)
  • Intellectual disability [MONDO:0001071, panelapp] (PTPA)
  • Intellectual disability [MONDO:0001071, panelapp] (RBSN)
  • Intellectual disability [MONDO:0001071. panelapp] (FEM1C)
  • Intellectual disability [MONDO:0001071] (ERGIC3)
  • Intellectual disability [panelapp] (ASTN1)
  • Intellectual disability [panelapp] (BRSK2)
  • Intellectual disability [panelapp] (CSDE1)
  • Mental retardation, AR (FRY)
  • Mental retardation, AR 3 (CC2D1A)
  • Mental retardation, AR 36 (ADAT3)
  • Mental retardation, AR 46 (NDST1)
  • Mental retardation, AR 47 (FMN2)
  • Mental retardation, AR 5 (NSUN2)
  • Mental retardation, AR 53 (PIGG)
  • Mental retardation, AR 58 (ELP2)
  • Mental retardation, AR 6 (GRIK2)
  • Mental retardation, AR 63 (CAMK2A)
  • Mental retardation, AR 67 (EIF3F)
  • Mental retardation, AR 68 (TRMT1)
  • Mental retardation, AR [panelapp] (ARL14EP)
  • Mental retardation, AR [panelapp] (ASCC3)
  • Mental retardation, AR [panelapp] (EEF1B2)
  • Neurodevelopmental disorder [MONDO:0700092, panelapp] (CCDC82)
Heredity, heredity patterns etc.
  • AD
  • AR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined