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Interdisciplinary CompetenceMolecular Diagnostics
Know how in the analysis of genetic material.
For the benefit of patients.

IllnessColon cancer, hereditary non-polyposis; differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for hereditary non-polyposis Colon cancer (HNPCC) comprising 5 guideline-curated core genes, 6 additional guideline-mentioned genes and altogether 19 curated genes according to the clinical signs

ID
KP5350
Number of genes
19 Accredited laboratory test
Examined sequence length
23,8 kb (Core-/Core-canditate-Genes)
55,9 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

KP5350_DH

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
EPCAM945NM_002354.3AD
MLH12271NM_000249.4AD
MSH22805NM_000251.3AD
MSH64083NM_000179.3AD
NTHL1915NM_002528.7AR
PMS22589NM_000535.7AD
POLD13324NM_002691.4AD
POLE6861NM_006231.4AD
APC8532NM_000038.6AD
BMPR1A1599NM_004329.3AD
CHEK21632NM_007194.4AD
MLH34362NM_001040108.2AD
MSH33414NM_002439.5AR
MUTYH1650NM_001128425.2AR, Sus
PTEN1212NM_000314.8AD
RNF435500NM_017763.6AD
SMAD41659NM_005359.6AD
STK111302NM_000455.5AD
TP531182NM_000546.6AD

Informations about the disease

Clinical Comment

Lynch syndrome, often referred to as hereditary non-polyposis colorectal cancer (HNPCC), is the most common cause of hereditary colorectal cancer. HNPCC is caused by pathogenic germline variants in the DNA "mismatch repair" genes (MLH1, MSH2, MSH6, PMS2). HNPCC is characterized not only by an increased risk of colorectal cancer but also cancers of the endometrium, stomach, ovary, small intestine, hepatobiliary tract, urinary tract, brain and skin. The following lifetime cancer risks apply for colorectal cancer: 52%-82% (average age at diagnosis 44-61 years); Endometrial cancer in women: 25%-60% (average age at diagnosis 48-62 years), Stomach cancer: 6%-13% (average age at diagnosis 56 years); Ovarian cancer: 4%-12% (average age at diagnosis 42.5 years). The mutation detection probability of the core panel is close to 100%. The additional genes of the panel cover the major differential diagnoses.

Reference: https://www.ncbi.nlm.nih.gov/books/NBK1211/

 

Synonyms
  • Alias: Colon-Ca.
  • Alias: Darmkrebs
  • Alias: Familial nonpolyposis colon cancer
  • Alias: Hereditary nonpolyposis colorectal cancer, HNPCC
  • Alias: Kolorektalkarzinom
  • Alias: Lynch syndrome
  • Alias: Rektum-Ca.
  • Allelic: Adrenocortical carcinoma, pediatric (TP53)
  • Allelic: Basal cell carcinoma 7 (TP53)
  • Allelic: Bone marrow failure syndrome 5 (TP53)
  • Allelic: Breast cancer, somatic (TP53)
  • Allelic: Choroid plexus papilloma (TP53)
  • Allelic: Diarrhea 5, with tufting enteropathy, congenital (EPCAM)
  • Allelic: Endometrial cancer, familial (MSH6)
  • Allelic: Endometrial carcinoma, somatic (MSH3)
  • Allelic: Esophageal cancer, somatic (TGFBR2)
  • Allelic: FILS syndrome (POLE)
  • Allelic: Glioma susceptibility 1 (TP53)
  • Allelic: IMAGE-I syndrome (POLE)
  • Allelic: Li-Fraumeni syndrome (TP53)
  • Allelic: Loeys-Dietz syndrome 2 (TGFBR2)
  • Allelic: Macrocephaly/autism syndrome ((PTEN)
  • Allelic: Mismatch repair cancer syndrome (MLH1, MSH2, MSH6, PMS2)
  • Allelic: Muir-Torre syndrome (MLH1, MSH2)
  • Allelic: Nasopharyngeal carcinoma, somatic (TP53)
  • Allelic: Osteosarcoma (TP53)
  • Allelic: Osteosarcoma, somatic (CHEK2)
  • Allelic: Pancreatic cancer, somatic (TP53)
  • Adenomas, multiple colorectal (MUTYH)
  • Adenomatous polyposis coli (APC)
  • Allelic: Hepatocellular carcinoma, somatic (TP53)
  • Allelic: Lhermitte-Duclos syndrome (PTEN)
  • Allelic: Mandibular hypoplasia, deafness, progeroid features, and lipodystrophy syndrome (POLD)
  • Brain tumor-polyposis syndrome 2 (APC)
  • Colorectal cancer (TP53)
  • Colorectal cancer, hereditary nonpolyposis, type 1 (MSH2)
  • Colorectal cancer, hereditary nonpolyposis, type 2 (MLH1)
  • Colorectal cancer, hereditary nonpolyposis, type 4 (PMS2)
  • Colorectal cancer, hereditary nonpolyposis, type 5 (MSH6)
  • Colorectal cancer, hereditary nonpolyposis, type 6 (TGFBR2)
  • Colorectal cancer, hereditary nonpolyposis, type 7 (MLH3)
  • Colorectal cancer, hereditary nonpolyposis, type 8 (EPCAM)
  • Colorectal cancer, somatic (MLH3)
  • Colorectal cancer, susceptibility to (CHEK2)
  • Colorectal cancer, susceptibility to, 10 (POLD1)
  • Colorectal cancer, susceptibility to, 12 (POLE)
  • Cowden syndrome 1 (PTEN)
  • Diamond-Blackfan anemia 9 (RPS10)
  • Familial adenomatous polyposis 3 (NTHL1)
  • Familial adenomatous polyposis 4 (MSH3)
  • Gardner syndrome (APC)
  • Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome (SMAD4)
  • Li-Fraumeni syndrome 2 (CHEK2)
  • Peutz-Jeghers syndrome (STK11)
  • Polyposis syndrome, hereditary mixed, 2 (BMPR1A)
  • Polyposis, juvenile intestinal (BMPR1A)
  • Polyposis, juvenile intestinal (SMAD4)
  • Sessile serrated polyposis cancer syndrome (RNF43)
Heredity, heredity patterns etc.
  • AD
  • AR
  • Sus
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined