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Interdisciplinary CompetenceMolecular Diagnostics
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IllnessCholestasis, progressive familial intrahepatic; differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for progressive familial intrahepatic cholestasis comprising 3 core genes, 2 more core candidate genes and altogether 14 curated genes according to the clinical signs

ID
CP6667
Number of genes
9 Accredited laboratory test
Examined sequence length
16,1 kb (Core-/Core-canditate-Genes)
26,2 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
ABCB113966NM_003742.4AR
ABCB43840NM_000443.4AR, AD
ATP8B13756NM_005603.6AR
NR1H41419NM_005123.4AR
TJP23063NM_004817.4AR
BAAT1257NM_001127610.2AR
DHCR71428NM_001360.3AR
MYO5B5547NM_001080467.3AR
VPS33B1854NM_018668.5AR

Informations about the disease

Clinical Comment

Progressive familial intrahepatic cholestasis (PFIC) leads to decreased bile secretion, resulting in liver disease and eventually liver failure. Symptoms typically begin in infancy with severe pruritus, jaundice, failure to thrive, portal hypertension and hepatosplenomegaly. The three autosomal recessively inherited types include PFIC1, PFIC2 and PFIC3. Each type has a different genetic cause. Patients with PFIC1 may have short stature, deafness, diarrhea, pancreatitis as well as low blood levels of fat-soluble vitamins, they usually develop liver failure before adulthood. The severe symptoms of PFIC2 are commonly associated only with liver disease and lead to liver failure within the first few years of life. These patients are also at increased risk of developing hepatocellular carcinoma. In most people with PFIC3, signs and symptoms of liver disease do not appear until later in infancy or early childhood, and rarely in early adulthood. In PFIC3, liver failure may occur in childhood or adulthood. Bi-allelic mutations in the ATP8B1, ABCB11 and ABCB4 genes can cause PFIC. The ATP8B1 gene and protein are responsible for bile acid homeostasis and prevent PFIC1. Mutations in the ABCB11 gene lead to the accumulation of bile salts in liver cells, their damage and PFIC2. Mutations in the ABCB4 gene lead to a lack of phospholipids available for bile acid binding and cause PFIC3. Some PFIC patients lack mutations in the aforementioned genes. Hence, the cause remains unknown. Although there are no recent comprehensive studies on molecular genetic diagnosis of PFIC as such, the general yield in neonatal and infantile cholestasis with appropriate panels or exome sequencing ranges from 60 to >80%. Negative DNA test results do not exclude the clinical diagnosis.

Reference: https://www.ncbi.nlm.nih.gov/books/NBK1297/

 

Synonyms
  • Allelic: Cholestasis, benign recurrent intrahepatic (ATP8B1)
  • Allelic: Cholestasis, intrahepatic, of pregnancy, 1 (ATP8B1)
  • Allelic: Cholestasis, intrahepatic, of pregnancy, 3 (ABCB4)
  • Allelic: Gallbladder disease 1 (ABCB4)
  • Allelic: Hypercholanemia, familial (TJP2)
  • Allelic: Keratoderma-ichthyosis-deafness syndrome, AR (VPS33B)
  • Arthrogryposis, renal dysfunction + cholestasis 1 (VPS33B)
  • Bile acid conjugation defect 1 (BAAT)
  • Cholestasis, benign recurrent intrahepatic, 2 (ABCB11)
  • Cholestasis, progressive familial intrahepatic 1 (ATP8B1)
  • Cholestasis, progressive familial intrahepatic 12 (VPS33B)
  • Cholestasis, progressive familial intrahepatic 2 (ABCB11)
  • Cholestasis, progressive familial intrahepatic 3 (ABCB4)
  • Cholestasis, progressive familial intrahepatic 4 (TJP2)
  • Cholestasis, progressive familial intrahepatic 5 (NR1H4)
  • Cholestasis, progressive familial intrahepatic 6 (SLC51A)
  • Cholestasis, progressive familial intrahepatic 7, +/- hearing loss (USP53)
  • Cholestasis, progressive familial intrahepatic 8 (KIF12)
  • Cholestasis, progressive familial intrahepatic 9 (ZFYVE19)
  • Dubin-Johnson syndrome (ABCC2)
  • Hypercholanemia, familial (BAAT)
  • Microvillus inclusion disease (MYO5B)
  • Smith-Lemli-Opitz syndrome (DHCR7)
Heredity, heredity patterns etc.
  • AD
  • AR
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined