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IllnessAlagille syndrome, differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Alagille syndrome comprising 2 guideline-curated core genes and altogether 24 curated genes according to the clinical signs

ID
AP0370
Number of genes
24 Accredited laboratory test
Examined sequence length
11,1 kb (Core-/Core-canditate-Genes)
66,8 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
JAG13657NM_000214.3AD
NOTCH27416NM_024408.4AD
ABCB113966NM_003742.4AR
ABCB43840NM_000443.4AR
AMACR1185NM_001167595.2AR
ATP8B13756NM_005603.6AR
BRAF2301NM_004333.6AD
CFTR4443NM_000492.4AR
ELN2175NM_000501.4AD
FOXC11662NM_001453.3AD
GALT1140NM_000155.4AR
GDF11119NM_001492.6AD, AR
MAP2K11182NM_002755.4AD
NEK82079NM_178170.3AR
NF18457NM_001042492.3AD
PEX13852NM_000466.3AR
PEX121080NM_000286.3AR
PEX62943NM_000287.4AR
PITX2816NM_153427.2n.k.
PTPN111782NM_002834.5AD
RAF11947NM_002880.4AD
RIT1660NM_006912.6AD
SERPINA11257NM_000295.5AR
SOS14002NM_005633.4AD

Informations about the disease

Clinical Comment

The pathogenesis in Alagille syndrome involves the liver, heart and other parts of the body. Main features are abnormalities in the bile ducts, causing bile to back up in the liver and scarring with jaundice, pruritus and xanthomas. Cardiac problems include pulmonary stenosis with ventricular septal defect and other abnormalities such as tetralogy of Fallot. Characteristic facial features involve a broad, prominent forehead, deep-set eyes and a small, pointed chin. In addition, the central nervous system and kidneys may be affected as well as the vertebrae. The first problems usually become apparent in infancy or early childhood. The severity of the disorder varies among affected individuals, even within a family. Symptoms range from being so mild that they go unnoticed to severe heart and/or liver disease requiring transplantation. Rarely, only isolated heart defects or a characteristic face are observed. The mode of inheritance is autosomal dominant. JAG1 mutations are identified in >90% of patients, and NOTCH2 mutations are present in a few others. Since overall the aforementioned mutations are detected in about 97% of Alagille patients, the clinical diagnosis is not confirmed by molecular genetics in virtually all cases.

Reference: https://www.ncbi.nlm.nih.gov/books/NBK1273/

 

Synonyms
  • Alias: Alagille-Watson syndrome
  • Alias: Arteriohepatic dysplasia
  • Alias: Cholestasis with peripheral pulmonary stenosis
  • Alias: Hepatic ductular hypoplasia, syndromatic
  • Allelic: Anterior segment dysgenesis 3, multiple subtypes (FOXC1)
  • Allelic: Anterior segment dysgenesis 4 (PITX2)
  • Allelic: Axenfeld-Rieger syndrome, type 1 (PITX2)
  • Allelic: Axenfeld-Rieger syndrome, type 3 (FOXC1)
  • Allelic: Cardiofaciocutaneous syndrome 3 (MAP2K1)
  • Allelic: Congenital heart defects, multiple types, 6 (GDF1)
  • Allelic: Cutis laxa, AD (ELN)
  • Allelic: Deafness, congenital heart defects + posterior embryotoxon (JAG1)
  • Allelic: Emphysema due to AAT deficiency (SERPINA1)
  • Allelic: Gallbladder disease 1 (ABCB4)
  • Allelic: Hajdu-Cheney syndrome (NOTCH2)
  • Allelic: Hemorrhagic diathesis due to antithrombin Pittsburgh (SERPINA1)
  • Allelic: Melorheostosis, isolated, somatic mosaic (MAP2K1)
  • Allelic: Nephronophthisis 9 (NEK8)
  • Allelic: Pancreatitis, hereditary (CFTR)
  • Allelic: Right atrial isomerism [Ivemark] (GDF1)
  • Allelic: Supravalvar aortic stenosis (ELN)
  • Allelic: Tetralogy of Fallot (JAG1)
  • Alagille syndrome 1 (JAG1)
  • Alagille syndrome 2 (NOTCH2)
  • Alpha-methylacyl-CoA racemase deficiency (AMACR)
  • Bile acid synthesis defect, congenital, 4 (AMACR)
  • Cholestasis, benign recurrent intrahepatic (ATP8B1)
  • Cholestasis, benign recurrent intrahepatic, 2 (ABCB11)
  • Cholestasis, intrahepatic, of pregnancy, 1 (ATP8B1)
  • Cholestasis, intrahepatic, of pregnancy, 3 (ABCB4)
  • Cholestasis, progressive familial intrahepatic 1 (ATP8B1)
  • Cholestasis, progressive familial intrahepatic 2 (ABCB11)
  • Cystic fibrosis (CFTR)
  • Emphysema-cirrhosis, due to AAT deficiency (SERPINA1)
  • Galactosemia (GALT)
  • Neurofibromatosis, type 1 (NF1)
  • Neurofibromatosis-Noonan syndrome (NF1)
  • Noonan syndrome 1 (PTPN11)
  • Noonan syndrome 4 (SOS1)
  • Noonan syndrome 5 (RAF1)
  • Noonan syndrome 7 (BRAF)
  • Noonan syndrome 8 (RIT1)
  • Peroxisome biogenesis disorder 1A [Zellweger] (PEX1)
  • Peroxisome biogenesis disorder 1B [NALD/IRD] (PEX1)
  • Peroxisome biogenesis disorder 3A [Zellweger] (PEX12)
  • Peroxisome biogenesis disorder 3B (PEX12)
  • Peroxisome biogenesis disorder 4A [Zellweger] (PEX6)
  • Peroxisome biogenesis disorder 4B (PEX6)
  • Renal-hepatic-pancreatic dysplasia 2 (NEK8)
  • Watson syndrome (NF1)
  • Williams-Beuren syndrome (ELN)
Heredity, heredity patterns etc.
  • AD
  • AR
  • n.k.
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined