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Know how in the analysis of genetic material.
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IllnessPrenatal DSD, differential diagnosis

Summary

Short information

Comprehensive differential diagnostic panel for Prenatal DSD containing 35 core candidate genes and altogether >120 curated genes according to the clinical signs

ID
PP0003
Number of genes
106 Accredited laboratory test
Examined sequence length
70,2 kb (Core-/Core-canditate-Genes)
228,3 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • Amniotic fluid (after amnocentesis)
  • Chorionic villus
  • EDTA-anticoagulated blood (3-5 ml)
  • Umbilical cord blood
Diagnostic indications

NGS +

[Sanger]

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GReferenz-Seq.Heredity
AMH1683NM_000479.5AR
AMHR21722NM_020547.3AR
AR2763NM_000044.6XLR
ATRX7479NM_000489.6XL
CDKN1C951NM_000076.2AD
CHD78994NM_017780.4AD
CUL4B2742NM_003588.4XLR
CYB5A297NM_001914.4AR
CYP11A11566NM_000781.3AR, AD
CYP11B11512NM_000497.4AR
CYP17A11527NM_000102.4AR
CYP19A11512NM_031226.3AR
CYP21A21488NM_000500.9AR
DHCR71428NM_001360.3AR
DHH1191NM_021044.4AR
HSD17B3933NM_000197.2AR
HSD3B21119NM_000198.4AR
LHCGR2100NM_000233.4AD, AR
MAMLD12325NM_005491.4XLR
MAP3K14539NM_005921.2AD
NR0B11413NM_000475.5XL
NR5A11386NM_004959.5AD, AR
POR2043NM_001395413.1AR
RPL10651NM_006013.5XLR
RSPO1792NM_001038633.4AR
SAMD94770NM_001193307.2AD
SGPL11721NM_003901.4AR
SOX101401NM_006941.4AD
SOX91530NM_000346.4AD
SRD5A2764NM_000348.4AR
SRY615NM_003140.3YL
STAR858NM_000349.3AR
TOE11488NM_025077.4AR
TSPYL11314NM_003309.4AR
WT11569NM_024426.6AD, SMu
AKR1C2420NM_001354.6AR
AKR1C4972NM_001818.5AR
ANOS12043NM_000216.4XLR
ARL6561NM_177976.3AR
B3GLCT1497NM_194318.4AR
BBS11782NM_024649.5AR, digenisch
BBS102172NM_024685.4AR
BBS122133NM_152618.3AR
BBS22166NM_031885.5AR
BBS41560NM_033028.5AR
BBS51026NM_152384.3AR
BBS72148NM_176824.3AR
BBS92664NM_198428.3AR
CBX21599NM_005189.3AR
CILK11899NM_014920.5AR
DCAF171563NM_025000.4AR
DHCR241551NM_014762.4AR
DMRT11122NM_021951.3AD
DYNC2H112945NM_001080463.2AR, digenisch
DYNC2I13201NM_018051.5AR
FEZF11428NM_001024613.4AR
FGF8735NM_033163.5AD
FGFR12469NM_023110.3AR
FGFR22466NM_000141.5AD
FOXL21131NM_023067.4AD
FRAS112039NM_025074.7AR
FREM29510NM_207361.6AR
FSHB390NM_000510.4AR
GATA41329NM_002052.5AD
GLI24761NM_005270.5AD
GNRH1291NM_000825.3AR
GNRHR987NM_000406.3AR
GRIP13231NM_021150.4AR
HAMP255NM_021175.4AR
HARS21521NM_012208.4AR
HCCS807NM_005333.5XL
HOXA131167NM_000522.5AD
IL17RD2220NM_017563.5AR
INSL3474NM_005543.4AD
KAT6B6222NM_012330.4AD
KISS1R1197NM_032551.5AR
KLB3135NM_175737.4AD
LHB426NM_000894.3AR
LHX11221NM_005568.5AD
LHX41173NM_033343.4AD
LZTFL1900NM_020347.4AR
MKKS1713NM_018848.3AR
MKS11680NM_017777.4AR
NEK13777NM_012224.4AR
NSMF1587NM_015537.5AD
PROK2390NM_001126128.2AD, AR
PROKR21155NM_144773.4AD, AR
PROP1681NM_006261.5AR
ROR22832NM_004560.4AD, AR
SALL13975NM_002968.3AD
SDCCAG82142NM_006642.5AR
SETBP14791NM_015559.3AD, SMu
SLC29A31428NM_018344.6AR
SLC40A11716NM_014585.6AD
SOX2954NM_003106.4AD
SOX31341NM_005634.3XL
SPECC1L3354NM_015330.6AD
TAC3366NM_013251.4AR
TACR31398NM_001059.3AR
TFR22406NM_003227.4AR
TMEM672988NM_153704.6AR
TTC81518NM_198309.3AR
WDR113675NM_018117.12AD
WNT41056NM_030761.5AD, AR
WNT5A1143NM_003392.7AD
ZFPM23456NM_012082.4AD

Informations about the disease

Clinical Comment

DSD are rarely present prenatally, very complex conditions, management should be directed by highly specialised teams to allow consideration of all aspects of diagnosis, treatment + ethical issues. Female fetus (clitoromegaly with normal labia). Male fetus (micropenis, hypospadias, undescended testes, bifid scrotum). Associated abnormalities: Chromosomal, mainly trisomy 13, triploidy, 13q syndrome, in a few cases. The condition is commonly associated with genetic syndromes (Smith-Lemli-Opitz + WAGR syndromes), other defects, mainly facial clefts + cardiac defects are often found.

 

Synonyms
  • Alias: Prenatal disorders of sex determination + differentiation
  • Allelic Premature ovarian failure 3 (FOXL2)
  • Allelic: Adrenocortical insufficiency (NR5A1)
  • Allelic: Beckwith-Wiedemann syndrome (CDKN1C)
  • Allelic: Congenital heart defects, multiple types, 4 (NR2F2)
  • Allelic: Craniosynostosis 3 (TCF12)
  • Allelic: Encephalitis/encephalopathy, mild, with reversible myelin vacuolization (MYRF)
  • Allelic: Hemochromatosis, type 4 (SLC40A1)
  • Allelic: Histiocytosis-lymphadenopathy plus syndrome (SLC29A3)
  • Allelic: Hypospadias 1, XL (AR)
  • Allelic: Neurodevelopmental disorder, brain anomalies with/-out vertebral/cardiac anomalies (DHX37)
  • Allelic: Short-rib thoracic dysplasia 3 with/-out polydactyly (DYNC2H1)
  • Allelic: Short-rib thoracic dysplasia 3 with/-out polydactyly (DYNC2I1)
  • 17,20-lyase deficiency, isolated (CYP17A1)
  • 17-alpha-hydroxylase/17,20-lyase deficiency (CYP17A1)
  • 46,XX sex reversal 5 (NR2F2)
  • 46XX sex reversal 1 (SRY)
  • 46XX sex reversal 4 (NR5A1)
  • 46XY partial gonadal dysgenesis, with minifascicular neuropathy (DHH)
  • 46XY sex reversal 1 (SRY)
  • 46XY sex reversal 11 (DHX37)
  • 46XY sex reversal 2, dosage-sensitive (NR0B1)
  • 46XY sex reversal 3 (NR5A1)
  • 46XY sex reversal 5 (CBX2)
  • 46XY sex reversal 6 (MAP3K1)
  • 46XY sex reversal 7 (DHH)
  • 46XY sex reversal 8 (AKR1C2)
  • 46XY sex reversal 8, modifier of (AKR1C4)
  • 46XY sex reversal 9 (ZFPM2)
  • Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency (CYP11B1)
  • Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency (CYP21A2)
  • Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency (HSD3B2)
  • Adrenal hypoplasia, congenital (NR0B1)
  • Adrenal insufficiency, congenital, with 46XY sex reversal, partial or complete (CYP11A1)
  • Aldosteronism, glucocorticoid-remediable (CYP11B1)
  • Androgen insensitivity (AR)
  • Androgen insensitivity, partial, with/-out breast cancer (AR)
  • Antley-Bixler syndrome with genital anomalies + disordered steroidogenesis (POR)
  • Aromatase deficiency (CYP19A1)
  • Aromatase excess syndrome (CYP19A1)
  • Bardet-Biedl s. (ARL6, BBS1, 10, 12, 2, 4, 5, 7, 9, LZTFR1, MKKS, MKS1, SDCCAG8, TMEM67, TTC()
  • Beare-Stevenson cutis gyrata syndrome (FGFR2)
  • Blepharophimosis, epicanthus inversus + ptosis, type 1 + 2 (FOXL2)
  • CHARGE syndrome (CHD7)
  • Campomelic dysplasia with autosomal sex reversal (SOX9)
  • Cardiac-urogenital syndrome (MYRF)
  • Cong. anomalies of kidney + urinary tract +/- hearing loss, abnormal ears/developmental delay (PBX1)
  • Cryptorchidism INSL3)
  • Culler-Jones syndrome (GLI2)
  • Denys-Drash syndrome (WT1)
  • Desmosterolosis (DHCR24)
  • Disordered steroidogenesis due to cytochrome P450 oxidoreductase (POR)
  • Endocrine-cerebroosteodysplasia (CILK1)
  • Fraser syndrome 1 (FRAS1)
  • Fraser syndrome 2 (FREM2)
  • Fraser syndrome 3 (GRIP1)
  • Frasier syndrome (WT1)
  • Genitopatellar syndrome )KAT6B)
  • Genitourinary and/or brain malformation syndrome (PPP1R12A)
  • Glucocorticoid resistance (NR3C1)
  • Guttmacher syndrome (HOXA13)
  • Hand-foot-uterus syndrome (HOXA13)
  • Hemochromatosis, type 3 (TFR2)
  • Hydranencephaly with abnormal genitalia (ARX)
  • Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency (CYP21A2)
  • Hypogonadotropic hypogonadism 1 with/-out anosmia; Kallmann syndrome 1 (ANOS1)
  • Hypogonadotropic hypogonadism 10 with/-out anosmia (TAC3)
  • Hypogonadotropic hypogonadism 12 with/-out anosmia (GNRH1)
  • Hypogonadotropic hypogonadism 14 with/-out anosmia (WDR11)
  • Hypogonadotropic hypogonadism 17 with/-out anosmia (SPRY4)
  • Hypogonadotropic hypogonadism 18 with/-out anosmia (IL17RD)
  • Hypogonadotropic hypogonadism 2 with/-out anosmia (FGFR1)
  • Hypogonadotropic hypogonadism 22, with/-out anosmia (FEZF1)
  • Hypogonadotropic hypogonadism 23 with/-out anosmia (LHB)
  • Hypogonadotropic hypogonadism 24 without anosmia (FSHB)
  • Hypogonadotropic hypogonadism 26 with/-out anosmia (TCF12)
  • Hypogonadotropic hypogonadism 3 with/-out anosmia (PROKR2)
  • Hypogonadotropic hypogonadism 4 with/-out anosmia (PROK2)
  • Hypogonadotropic hypogonadism 5 with/-out anosmia (CHD7)
  • Hypogonadotropic hypogonadism 6 with/-out anosmia (FGF8)
  • Hypogonadotropic hypogonadism 7 without anosmia (GNRHR)
  • Hypogonadotropic hypogonadism 8 with/-out anosmia (KISS1R)
  • Hypogonadotropic hypogonadism 9 with/-out anosmia (NSMF)
  • Hypogonadotropic hypogonadism []panelapp] (HAMP)
  • Hypospadias 2, XL (MAMLD1)
  • Hypothyroidism, congenital, due to thyroid dysgenesis or hypoplasia (PAX8)
  • IMAGE syndrome (CDKN1C)
  • Intellectual developmental disorder, XL, syndromic, 35 (RPL10)
  • Leydig cell hypoplasia with hypergonadotropic hypogonadism (LHCGR)
  • Leydig cell hypoplasia with pseudohermaphroditism (LHCGR)
  • Linear skin defects with multiple congenital anomalies 1 (HCCS)
  • Lipoid adrenal hyperplasia (STAR)
  • Luteinizing hormone resistance, female (LHCGR)
  • MIRAGE syndrome (SAMD9)
  • Meacham syndrome (WT1)
  • Mental retardation, XL, syndromic 15 [Cabezas type] (CUL4B)
  • Mental retardation-hypotonic facies syndrome, XL (ATRX)
  • Methemoglobinemia and ambiguous genitalia (CYB5A)
  • Microcephaly, facial dysmorphism, renal agenesis + ambiguous genitalia syndrome (CTU2)
  • Microphthalmia, syndromic 3 (SOX2)
  • Mullerian aplasia and hyperandrogenism (WNT4)
  • Nephrotic syndrome, type 14 (SSGPL1)
  • Nivelon-Nivelon-Mabille [chondrodysplasia-pseudohermaphroditism] syndrome (HHAT)
  • Normosmic IHH, idiopathic Hypogonadotropic hypogonadism [panelapp] (CCDC141)
  • Opitz GBBB syndrome, type II (SECC1L)
  • Ovarian dysgenesis 8 (ESR2)
  • PCWH syndrome (SOX10)
  • Palmoplantar hyperkeratosis + true hermaphroditism (RSPO1)
  • Palmoplantar hyperkeratosis with squamous cell carcinoma of skin + sex reversal (RSPO1)
  • Panhypopituitarism, XL (SOX3)
  • Perrault syndrome 2 (HARS2)
  • Persistent Mullerian duct syndrome, type I (AMH)
  • Persistent Mullerian duct syndrome, type II (AMHR2)
  • Peters-plus syndrome (B3GLCT)
  • Pituitary hormone deficiency, combined, 2 (PROP1)
  • Pituitary hormone deficiency, combined, 4 (LHX4)
  • Pontocerebellar hypoplasia, type 7 (TOE1)
  • Precocious puberty, central, 1 (KISS1R)
  • Proud syndrome (ARX)
  • Pseudohermaphroditism, male, with gynecomastia (HSD17B3)
  • Pseudovaginal perineoscrotal hypospadias (SRD5A2)
  • Robinow syndrome, AD 1 (WNT5A)
  • Robinow syndrome, AR (ROR2)
  • SERKAL syndrome (WNT4)
  • Schinzel-Giedion midface retraction syndrome (SETBP1)
  • Short-rib thoracic dysplasia 6 with/-out polydactyly (NEK1)
  • Smith-Lemli-Opitz syndrome (DHCR7)
  • Sudden infant death with dysgenesis of the testes syndrome (TSPYL1)
  • Testicular anomalies with or without congenital heart disease (GATA4)
  • Townes-Brocks syndrome 1 (SALL1)
  • Waardenburg syndrome, type 2E, with/-out neurologic involvement (SOX10)
  • Waardenburg syndrome, type 4C (SOX10)
  • Woodhouse-Sakati syndrome (DCAF17)
Heredity, heredity patterns etc.
  • AD
  • AR
  • SMu
  • XL
  • XLR
  • YL
  • digenisch
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code

Bioinformatics and clinical interpretation

No text defined