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IllnessLippen-Kiefer-Gaumen-(Gesichts-)Spalten, nicht-syndromal; Differentialdiagnose

Summary

Short information

A comprehensive differential diagnostic panel for clefting comprising more than 50 curated genes

ID
LP6465
Number of genes
54 Accredited laboratory test
Examined sequence length
54,5 kb (Core-/Core-canditate-Genes)
111,6 kb (Extended panel: incl. additional genes)
Analysis Duration
on request
Material
  • EDTA-anticoagulated blood (3-5 ml)
Diagnostic indications

NGS +

 

Gene panel

Selected genes

NameExon Length (bp)OMIM-GHeredity
BCOR5166XLD
CDH12649AD
COL11A15421AD, AR
COL11A25211AD, AR
COL2A14464AD
EFNB11041XLD
FGFR12469AD
FGFR22466AD
FLNA7920XL
GRHL31671AD
IRF61404AD
MSX1912AD
OFD13039XL
PHF83075XLR
SOX91530AD
TBX221563AD
TCOF14467AD
AHCY1299AR
BHMT1221n.k.
CRISPLD21557Mult, Ass
CTH1122AR
DHFR564AR
DMGDH2601AR
FOLH12160Mult, Ass
FOLR1774AR
FOLR2797Mult, Ass
FOLR3741Mult, Ass
FOXE11122n.k.
FTCD1626AR
JAG23717Mult, Ass
MAT1A1188AD, AR
MAT2A1188AD
MAT2B1103Mult, Ass
MTHFD12808AR
MTHFD21061Mult, Ass
MTHFR1971Mult, Ass
MTHFS441AR
MTR3798AR
MTRR2097AR
NOS33612Mult
PAX71563SMu
PON11068AR
PQBP1798XLR
ROCK14065AR
SHMT11452AD
SHMT21555Mult, Ass
SLC19A11470AR
SLC46A11297AR
SMS942XLR
SUMO1306AR
TCN21284AR
TGFA563AR
TGFB21245AD
TYMS942AR

Informations about the disease

Clinical Comment

Orofacial clefts are the most common orofacial malformations in humans. During the first 6-10 weeks of gestation, the bones and skin of the fetal upper jaw, nose, and mouth fuse together normally to form the roof of the mouth and upper lip. Cleft formations occur when parts of the lip and/or palate do not completely fuse together. The reasons for most clefts remain unclear; some may be related to genetics, others to environmental factors (medications and chemicals during pregnancy, deficiencies in key prenatal nutrients, smoking and alcohol etc.). An increased risk of recurrence of clefts in relatives suggests a high degree of heritability. Monogenic causes, however, are the exception; they include mutations in genes encoding cell proliferation and migration, cell-cell adhesion proteins, folate and homocysteine metabolism. In essence, orofacial clefts are considered typically complex and multifactorial disorders caused by multiple genetic and environmental factors. In contrast to various cleft formation syndromes, the molecular genetic yield of non-syndromic clefts in familial cases hardly exceeds 10%. Therefore, syndromic cleft genes should be included in the differential diagnosis. Nevertheless, the clinical diagnosis clefting is rarely accompanied by positive DNA test results. +

Reference: https://www.frontiersin.org/articles/10.3389/fcell.2020.592271/full

https://richtlijnendatabase.nl/richtlijn/behandeling_van_patienten_met_een_schisis/diagnostic_genetic_testing_in_isolated_clefts_of_the_lip_alveolus_and_or_palate.html

 

Synonyms
  • Acampomelic campomelic dysplasia (SOX9)
  • Allelic: Abruzzo-Erickson syndrome (TBX22)
  • Allelic: Ectodermal dysplasia 3, Witkop type (MSX1)
  • Allelic: Joubert syndrome 10 (OFD1)
  • Allelic: Simpson-Golabi-Behmel syndrome, type 2 (OFD1)
  • Bamforth-Lazarus syndrome (FOXE1)
  • Blepharocheilodontic syndrome 1 (CDH1)
  • Campomelic dysplasia (SOX9)
  • Cerebellar ataxia, neuropathy + vestibular areflexia syndrome (RFC1)
  • Cleft palate with ankyloglossia (TBX22)
  • Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia (MTHFD1)
  • Craniofrontonasal dysplasia (EFNB1)
  • Cystathioninuria (CTH)
  • Dimethylglycine dehydrogenase deficiency (DMGDH)
  • Folate malabsorption, hereditary (SLC46A1)
  • Frontometaphyseal dysplasia 1 (FLNA)
  • Gastric cancer, hereditary diffuse, with/-out cleft lip and/or palate (CDH1)
  • Glutamate formiminotransferase deficiency (FTCD)
  • Glycine N-methyltransferase deficiency (GNMT)
  • Homocystinuria due to MTHFR deficiency (MTHFR)
  • Homocystinuria, B6-responsive and nonresponsive types (CBS)
  • Homocystinuria-megaloblastic anemia, cbl E type (MTRR)
  • Homocystinuria-megaloblastic anemia, cblG complementation type (MTR)
  • Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase (AHCY)
  • Jackson-Weiss syndrome (FGFR1, FGFR2)
  • Loeys-Dietz syndrome 4 (TGB2)
  • Marshall syndrome (COL11A1)
  • Megaloblastic anemia due to dihydrofolate reductase deficiency (DHFR)
  • Megaloblastic anemia, folate-responsive (SLC19A1)
  • Melnick-Needles syndrome (FLNA)
  • Mental retardation syndrome, XL, Siderius type (PHF8)
  • Mental retardation, XL, Snyder-Robinson type (SMS)
  • Methionine adenosyltransferase deficiency, AR (MAT1A)
  • Microphthalmia, syndromic 2 (BCOR)
  • Myopathy, congenital, progressive, with scoliosis (PAX7)
  • Neurodegeneration due to cerebral folate transport deficiency (FOLR1)
  • Neurodevelopmental disorder with cardiomyopathy, spasticity + brain abnormalities (SHMT2)
  • Neurodevelopmental disorder with microcephaly, epilepsy, and hypomyelination (MTHFS)
  • Orofacial cleft 10 (SUMO1)
  • Orofacial cleft 5 (MSX1)
  • Orofacial cleft 6 (IRF6)
  • Orofaciodigital syndrome I (OFD1)
  • Otopalatodigital syndrome, type I + II (FLNA)
  • Otospondylomegaepiphyseal dysplasia, AD (COL11A2)
  • Otospondylomegaepiphyseal dysplasia, AR (COL11A2)
  • Renpenning syndrome (PQBP1)
  • Stickler syndrome, type I (COL2A1)
  • Stickler syndrome, type II (COL11A1)
  • Tooth agenesis, selective, 1, with/-out orofacial cleft (MSX1)
  • Transcobalamin II deficiency (TCN2)
  • Treacher Collins syndrome 1 (TCOF1)
  • Van der Woude syndrome (IRF6)
  • Van der Woude syndrome 2 (GRHL3)
Heredity, heredity patterns etc.
  • AD
  • AR
  • Ass
  • Mult
  • SMu
  • XL
  • XLD
  • XLR
  • n.k.
OMIM-Ps
  • Multiple OMIM-Ps
ICD10 Code
Q37.9

Bioinformatics and clinical interpretation

No text defined